Publications
Browse or search these reports, presentations and journal articles by Dragonfly staff and collaborators.
Calcott, B., Pocheville, A., & Griffiths, P. (2020). Signals that make a difference. The British Journal for the Philosophy of Science, 71(1), 233–258. Retrieved from https://www.dropbox.com/s/jegvktibdt0ljje/Calcott_et_al_2017_Signals_that_Make_a_Difference.pdf?dl=0
Signals that make a difference
Calcott, B., Pocheville, A., & Griffiths, P. (2020). Signals that make a difference. The British Journal for the Philosophy of Science, 71(1), 233–258. Retrieved from https://www.dropbox.com/s/jegvktibdt0ljje/Calcott_et_al_2017_Signals_that_Make_a_Difference.pdf?dl=0
Calcott, B. (2019). Further clarification on permissive and instructive causes. Biology & Philosophy, 34(5), 50. Retrieved from https://www.dropbox.com/s/18ak6om2g5p0rpw/Calcott_2019_Further_Clarification_on_the_Permissive_instructive.pdf?dl=0
Further clarification on permissive and instructive causes
Calcott, B. (2019). Further clarification on permissive and instructive causes. Biology & Philosophy, 34(5), 50. Retrieved from https://www.dropbox.com/s/18ak6om2g5p0rpw/Calcott_2019_Further_Clarification_on_the_Permissive_instructive.pdf?dl=0
Parke, E. C., Calcott, B., & O’Malley, M. A. (2018). A cautionary note for claims about the microbiome’s impact on the ”self”. PLoS Biology, 16(9), e2006654.
A cautionary note for claims about the microbiome's impact on the "self"
Parke, E. C., Calcott, B., & O’Malley, M. A. (2018). A cautionary note for claims about the microbiome’s impact on the ”self”. PLoS Biology, 16(9), e2006654.
Calcott, B. (2017). Causal specificity and the instructive–permissive distinction. Biology & Philosophy, 32(4), 481–505. Retrieved from https://www.dropbox.com/s/gpl3tm88rcnmqwj/Calcott_2017_Causal_specificity_and_the_instructive_permissive_distinction_.pdf?dl=0
Causal specificity and the instructive–permissive distinction
Calcott, B. (2017). Causal specificity and the instructive–permissive distinction. Biology & Philosophy, 32(4), 481–505. Retrieved from https://www.dropbox.com/s/gpl3tm88rcnmqwj/Calcott_2017_Causal_specificity_and_the_instructive_permissive_distinction_.pdf?dl=0
Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., & Calcott, B. (2017). PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution, 34(3), 772–773.
PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses
Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., & Calcott, B. (2017). PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution, 34(3), 772–773.
Calcott, B., Levy, A., Siegal, M. L., Soyer, O. S., & Wagner, A. (2015). Engineering and biology: Counsel for a continued relationship. Biological Theory, 10(1), 50–59. Retrieved from https://www.dropbox.com/s/r8ddohae94kku9v/Calcott_et_al_2015_Engineering_and_Biology.pdf?dl=0
Engineering and biology: counsel for a continued relationship
Calcott, B., Levy, A., Siegal, M. L., Soyer, O. S., & Wagner, A. (2015). Engineering and biology: Counsel for a continued relationship. Biological Theory, 10(1), 50–59. Retrieved from https://www.dropbox.com/s/r8ddohae94kku9v/Calcott_et_al_2015_Engineering_and_Biology.pdf?dl=0
Frandsen, P. B., Calcott, B., Mayer, C., & Lanfear, R. (2015). Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates. BMC Evolutionary Biology, 15(1), 1–17. Retrieved from https://www.dropbox.com/s/2f5hxvqptkp2ulj/Frandsen_et_al_2015_Automatic_Selection_of_Partitioning_Schemes_for_Phylogenetic_Analyses_Using.pdf?dl=0
Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates
Frandsen, P. B., Calcott, B., Mayer, C., & Lanfear, R. (2015). Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates. BMC Evolutionary Biology, 15(1), 1–17. Retrieved from https://www.dropbox.com/s/2f5hxvqptkp2ulj/Frandsen_et_al_2015_Automatic_Selection_of_Partitioning_Schemes_for_Phylogenetic_Analyses_Using.pdf?dl=0
Griffiths, P. E., Pocheville, A., Calcott, B., Stotz, K., Kim, H., & Knight, R. (2015). Measuring causal specificity. Philosophy of Science, 82(4), 529–555. Retrieved from https://www.dropbox.com/s/99ciaghms6ptzx5/Griffiths_et_al_2015_Measuring_Causal_Specificity.pdf?dl=0
Measuring causal specificity
Griffiths, P. E., Pocheville, A., Calcott, B., Stotz, K., Kim, H., & Knight, R. (2015). Measuring causal specificity. Philosophy of Science, 82(4), 529–555. Retrieved from https://www.dropbox.com/s/99ciaghms6ptzx5/Griffiths_et_al_2015_Measuring_Causal_Specificity.pdf?dl=0
Calcott, B. (2014). The creation and reuse of information in gene regulatory networks. Philosophy of Science, 81(5), 879–890. Retrieved from https://www.dropbox.com/s/jym9r3mkqkzpi5r/Calcott_2014_The_Creation_and_Reuse_of_Information_in_Gene_Regulatory_Networks.pdf?dl=0
The creation and reuse of information in gene regulatory networks
Calcott, B. (2014). The creation and reuse of information in gene regulatory networks. Philosophy of Science, 81(5), 879–890. Retrieved from https://www.dropbox.com/s/jym9r3mkqkzpi5r/Calcott_2014_The_Creation_and_Reuse_of_Information_in_Gene_Regulatory_Networks.pdf?dl=0